J5_6GXP_005

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC

Length

37 nucleotides

Bulged bases

6GXP|1|A|A|2448, 6GXP|1|A|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GXP|1|A|G|2057
6GXP|1|A|A|2058
6GXP|1|A|A|2059
6GXP|1|A|A|2060
6GXP|1|A|G|2061
6GXP|1|A|A|2062
6GXP|1|A|C|2063
6GXP|1|A|C|2064
*
6GXP|1|A|G|2446
6GXP|1|A|G|2447
6GXP|1|A|A|2448
6GXP|1|A|U|2449
6GXP|1|A|A|2450
6GXP|1|A|A|2451
6GXP|1|A|C|2452
6GXP|1|A|A|2453
*
6GXP|1|A|U|2500
6GXP|1|A|C|2501
6GXP|1|A|G|2502
6GXP|1|A|A|2503
6GXP|1|A|U|2504
6GXP|1|A|G|2505
6GXP|1|A|U|2506
6GXP|1|A|C|2507
*
6GXP|1|A|G|2582
6GXP|1|A|G|2583
6GXP|1|A|U|2584
6GXP|1|A|U|2585
6GXP|1|A|U|2586
6GXP|1|A|A|2587
6GXP|1|A|G|2588
*
6GXP|1|A|C|2606
6GXP|1|A|G|2607
6GXP|1|A|G|2608
6GXP|1|A|U|2609
6GXP|1|A|C|2610
6GXP|1|A|C|2611

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain C

50S ribosomal protein L2

Chain D

50S ribosomal protein L3

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L16

Chain S

50S ribosomal protein L22

Chain z

Apidaecin