J5_6GXP_006

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

6GXP|1|a|U|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6GXP_006 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.1383

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6GXP|1|a|C|36
6GXP|1|a|U|37
6GXP|1|a|G|38
6GXP|1|a|G|39
*
6GXP|1|a|C|403
6GXP|1|a|G|404
6GXP|1|a|U|405
6GXP|1|a|G|406
*
6GXP|1|a|C|436
6GXP|1|a|U|437
6GXP|1|a|U|438
6GXP|1|a|U|439
6GXP|1|a|C|440
*
6GXP|1|a|G|497
6GXP|1|a|A|498
6GXP|1|a|A|499
6GXP|1|a|G|500
*
6GXP|1|a|C|545
6GXP|1|a|A|546
6GXP|1|a|A|547
6GXP|1|a|G|548

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain l

30S ribosomal protein S12

Chain w

Peptide chain release factor RF3