J5_6GZ3_002

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAGCGCC*GCGUACGG*CCGGAGUCG*CAAAGCG*UAAG

Length

36 nucleotides

Bulged bases

6GZ3|1|A2|G|157, 6GZ3|1|A2|C|303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ3|1|A2|C|111
6GZ3|1|A2|C|112
6GZ3|1|A2|A|113
6GZ3|1|A2|G|114
6GZ3|1|A2|C|115
6GZ3|1|A2|G|116
6GZ3|1|A2|C|117
6GZ3|1|A2|C|118
*
6GZ3|1|A2|G|151
6GZ3|1|A2|C|152
6GZ3|1|A2|G|153
6GZ3|1|A2|U|154
6GZ3|1|A2|A|155
6GZ3|1|A2|C|156
6GZ3|1|A2|G|157
6GZ3|1|A2|G|158
*
6GZ3|1|A2|C|269
6GZ3|1|A2|C|270
6GZ3|1|A2|G|271
6GZ3|1|A2|G|272
6GZ3|1|A2|A|273
6GZ3|1|A2|G|274
6GZ3|1|A2|U|275
6GZ3|1|A2|C|276
6GZ3|1|A2|G|277
*
6GZ3|1|A2|C|298
6GZ3|1|A2|A|299
6GZ3|1|A2|A|300
6GZ3|1|A2|A|301
6GZ3|1|A2|G|302
6GZ3|1|A2|C|303
6GZ3|1|A2|G|304
*
6GZ3|1|A2|U|321
6GZ3|1|A2|A|322
6GZ3|1|A2|A|323
6GZ3|1|A2|G|324

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AG

ribosomal protein eL8

Chain AL

ribosomal protein eL13

Chain AN

Ribosomal protein L15

Chain Ah

ribosomal protein uL29

Chain Ai

ribosomal protein eL36