J5_6GZ3_004
3D structure
- PDB id
- 6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6GZ3|1|A2|G|3591, 6GZ3|1|A2|G|3596
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6GZ3_004 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1449
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GZ3|1|A2|G|2834
6GZ3|1|A2|C|2835
6GZ3|1|A2|A|2836
6GZ3|1|A2|A|2837
6GZ3|1|A2|G|2838
6GZ3|1|A2|C|2839
6GZ3|1|A2|C|2840
6GZ3|1|A2|G|2841
6GZ3|1|A2|G|2842
*
6GZ3|1|A2|U|2866
6GZ3|1|A2|G|2867
*
6GZ3|1|A2|U|3584
6GZ3|1|A2|G|3585
*
6GZ3|1|A2|C|3589
6GZ3|1|A2|G|3590
6GZ3|1|A2|G|3591
6GZ3|1|A2|A|3592
6GZ3|1|A2|C|3593
6GZ3|1|A2|C|3594
6GZ3|1|A2|A|3595
6GZ3|1|A2|G|3596
6GZ3|1|A2|G|3597
*
6GZ3|1|A2|C|3806
6GZ3|1|A2|A|3807
6GZ3|1|A2|C|3808
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AB
- ribosomal protein uL3
- Chain AR
- ribosomal protein eL19
- Chain AV
- Ribosomal protein L23
- Chain AW
- ribosomal protein eL24
- Chain B1
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: