J5_6GZ3_005
3D structure
- PDB id
- 6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 6GZ3|1|A2|A|3879, 6GZ3|1|A2|A|4356, 6GZ3|1|A2|U|4357, 6GZ3|1|A2|U|4517
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GZ3|1|A2|A|3874
6GZ3|1|A2|G|3875
6GZ3|1|A2|A|3876
6GZ3|1|A2|A|3877
6GZ3|1|A2|G|3878
6GZ3|1|A2|A|3879
6GZ3|1|A2|C|3880
6GZ3|1|A2|C|3881
*
6GZ3|1|A2|G|4354
6GZ3|1|A2|G|4355
6GZ3|1|A2|A|4356
6GZ3|1|A2|U|4357
6GZ3|1|A2|A|4358
6GZ3|1|A2|A|4359
6GZ3|1|A2|C|4360
6GZ3|1|A2|U|4361
6GZ3|1|A2|G|4362
*
6GZ3|1|A2|C|4406
6GZ3|1|A2|U|4407
6GZ3|1|A2|U|4408
6GZ3|1|A2|C|4409
6GZ3|1|A2|G|4410
6GZ3|1|A2|A|4411
6GZ3|1|A2|U|4412
6GZ3|1|A2|G|4413
6GZ3|1|A2|U|4414
6GZ3|1|A2|C|4415
*
6GZ3|1|A2|G|4490
6GZ3|1|A2|G|4491
6GZ3|1|A2|U|4492
6GZ3|1|A2|U|4493
6GZ3|1|A2|U|4494
6GZ3|1|A2|A|4495
6GZ3|1|A2|G|4496
*
6GZ3|1|A2|U|4514
6GZ3|1|A2|A|4515
6GZ3|1|A2|G|4516
6GZ3|1|A2|U|4517
6GZ3|1|A2|U|4518
6GZ3|1|A2|U|4519
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AA
- Ribosomal protein L8
- Chain AB
- ribosomal protein uL3
- Chain AC
- ribosomal protein uL4
- Chain AI
- Ribosomal protein L10 (Predicted)
- Chain Ab
- ribosomal protein eL29
- Chain Bv
- Transfer RNA; tRNA
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