J5_6GZ3_007

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

6GZ3|1|B1|A|590, 6GZ3|1|B1|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ3|1|B1|C|30
6GZ3|1|B1|U|31
6GZ3|1|B1|U|32
6GZ3|1|B1|G|33
6GZ3|1|B1|U|34
*
6GZ3|1|B1|A|521
6GZ3|1|B1|A|522
6GZ3|1|B1|A|523
6GZ3|1|B1|U|524
6GZ3|1|B1|A|525
6GZ3|1|B1|A|526
6GZ3|1|B1|C|527
*
6GZ3|1|B1|G|558
6GZ3|1|B1|G|559
6GZ3|1|B1|A|560
6GZ3|1|B1|A|561
6GZ3|1|B1|U|562
6GZ3|1|B1|G|563
6GZ3|1|B1|A|564
6GZ3|1|B1|G|565
*
6GZ3|1|B1|C|585
6GZ3|1|B1|G|586
6GZ3|1|B1|A|587
6GZ3|1|B1|G|588
6GZ3|1|B1|G|589
6GZ3|1|B1|A|590
6GZ3|1|B1|U|591
6GZ3|1|B1|C|592
6GZ3|1|B1|C|593
6GZ3|1|B1|A|594
6GZ3|1|B1|U|595
*
6GZ3|1|B1|A|641
6GZ3|1|B1|U|642
6GZ3|1|B1|A|643
6GZ3|1|B1|G|644

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BJ

Ribosomal protein S9 (Predicted)

Chain BX

Ribosomal protein S23

Chain Be

ribosomal protein eS30

Chain Ct

eukaryotic elongation factor 2 (eEF2)