J5_6GZ3_011
3D structure
- PDB id
- 6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AUCUUGG*CCCUUGC*GCGUUU*AUGGAAUAGGACC*GCCAUGAU
- Length
- 41 nucleotides
- Bulged bases
- 6GZ3|1|B1|C|687, 6GZ3|1|B1|U|688, 6GZ3|1|B1|C|741, 6GZ3|1|B1|U|871, 6GZ3|1|B1|G|873, 6GZ3|1|B1|A|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GZ3|1|B1|A|685
6GZ3|1|B1|U|686
6GZ3|1|B1|C|687
6GZ3|1|B1|U|688
6GZ3|1|B1|U|689
6GZ3|1|B1|G|690
6GZ3|1|B1|G|691
*
6GZ3|1|B1|C|739
6GZ3|1|B1|C|740
6GZ3|1|B1|C|741
6GZ3|1|B1|U|742
6GZ3|1|B1|U|743
6GZ3|1|B1|G|744
6GZ3|1|B1|C|745
*
6GZ3|1|B1|G|796
6GZ3|1|B1|C|797
6GZ3|1|B1|G|798
6GZ3|1|B1|U|799
6GZ3|1|B1|U|800
6GZ3|1|B1|U|801
*
6GZ3|1|B1|A|865
6GZ3|1|B1|U|866
6GZ3|1|B1|G|867
6GZ3|1|B1|G|868
6GZ3|1|B1|A|869
6GZ3|1|B1|A|870
6GZ3|1|B1|U|871
6GZ3|1|B1|A|872
6GZ3|1|B1|G|873
6GZ3|1|B1|G|874
6GZ3|1|B1|A|875
6GZ3|1|B1|C|876
6GZ3|1|B1|C|877
*
6GZ3|1|B1|G|910
6GZ3|1|B1|C|911
6GZ3|1|B1|C|912
6GZ3|1|B1|A|913
6GZ3|1|B1|U|914
6GZ3|1|B1|G|915
6GZ3|1|B1|A|916
6GZ3|1|B1|U|917
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain AR
- ribosomal protein eL19
- Chain BE
- ribosomal protein eS4
- Chain BH
- 40S ribosomal protein S7
- Chain BL
- Ribosomal protein S11
- Chain BN
- ribosomal protein uS15
- Chain BW
- Ribosomal protein S15a
- Chain BX
- Ribosomal protein S23
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