J5_6GZ3_013

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUCGACUU*AUGCCGACGGGC*GUGCAUU*ACCUCGGGCCG*CGACC

Length

43 nucleotides

Bulged bases

6GZ3|1|B1|C|142, 6GZ3|1|B1|U|143, 6GZ3|1|B1|U|214, 6GZ3|1|B1|U|305, 6GZ3|1|B1|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ3|1|B1|G|123
6GZ3|1|B1|U|124
6GZ3|1|B1|C|125
6GZ3|1|B1|G|126
6GZ3|1|B1|A|141
6GZ3|1|B1|C|142
6GZ3|1|B1|U|143
6GZ3|1|B1|U|144
*
6GZ3|1|B1|A|175
6GZ3|1|B1|U|176
6GZ3|1|B1|G|177
6GZ3|1|B1|C|178
6GZ3|1|B1|C|179
6GZ3|1|B1|G|180
6GZ3|1|B1|A|181
6GZ3|1|B1|C|182
6GZ3|1|B1|G|183
6GZ3|1|B1|G|184
6GZ3|1|B1|G|185
6GZ3|1|B1|C|186
*
6GZ3|1|B1|G|213
6GZ3|1|B1|U|214
6GZ3|1|B1|G|215
6GZ3|1|B1|C|216
6GZ3|1|B1|A|217
6GZ3|1|B1|U|218
6GZ3|1|B1|U|219
*
6GZ3|1|B1|A|302
6GZ3|1|B1|C|303
6GZ3|1|B1|C|304
6GZ3|1|B1|U|305
6GZ3|1|B1|C|306
6GZ3|1|B1|G|307
6GZ3|1|B1|G|308
6GZ3|1|B1|G|309
6GZ3|1|B1|C|310
6GZ3|1|B1|C|311
6GZ3|1|B1|G|312
*
6GZ3|1|B1|C|337
6GZ3|1|B1|G|338
6GZ3|1|B1|A|339
6GZ3|1|B1|C|340
6GZ3|1|B1|C|341

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain AW

ribosomal protein eL24

Chain BE

ribosomal protein eS4

Chain BG

40S ribosomal protein S6

Chain BI

ribosomal protein eS8