J5_6GZ5_004

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

6GZ5|1|A2|A|3879, 6GZ5|1|A2|A|4356, 6GZ5|1|A2|U|4357, 6GZ5|1|A2|G|4413, 6GZ5|1|A2|U|4414, 6GZ5|1|A2|U|4493, 6GZ5|1|A2|U|4517, 6GZ5|1|A2|U|4518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ5|1|A2|A|3874
6GZ5|1|A2|G|3875
6GZ5|1|A2|A|3876
6GZ5|1|A2|A|3877
6GZ5|1|A2|G|3878
6GZ5|1|A2|A|3879
6GZ5|1|A2|C|3880
6GZ5|1|A2|C|3881
*
6GZ5|1|A2|G|4354
6GZ5|1|A2|G|4355
6GZ5|1|A2|A|4356
6GZ5|1|A2|U|4357
6GZ5|1|A2|A|4358
6GZ5|1|A2|A|4359
6GZ5|1|A2|C|4360
6GZ5|1|A2|U|4361
6GZ5|1|A2|G|4362
*
6GZ5|1|A2|C|4406
6GZ5|1|A2|U|4407
6GZ5|1|A2|U|4408
6GZ5|1|A2|C|4409
6GZ5|1|A2|G|4410
6GZ5|1|A2|A|4411
6GZ5|1|A2|U|4412
6GZ5|1|A2|G|4413
6GZ5|1|A2|U|4414
6GZ5|1|A2|C|4415
*
6GZ5|1|A2|G|4490
6GZ5|1|A2|G|4491
6GZ5|1|A2|U|4492
6GZ5|1|A2|U|4493
6GZ5|1|A2|U|4494
6GZ5|1|A2|A|4495
6GZ5|1|A2|G|4496
*
6GZ5|1|A2|U|4514
6GZ5|1|A2|A|4515
6GZ5|1|A2|G|4516
6GZ5|1|A2|U|4517
6GZ5|1|A2|U|4518
6GZ5|1|A2|U|4519

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

ribosomal protein uL2

Chain AB

ribosomal protein uL3

Chain AC

ribosomal protein uL4

Chain AI

ribosomal protein uL16

Chain Ab

ribosomal protein eL29

Chain Bv

Transfer RNA; tRNA