J5_6GZ5_006

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

6GZ5|1|B1|A|560, 6GZ5|1|B1|A|590, 6GZ5|1|B1|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ5|1|B1|C|30
6GZ5|1|B1|U|31
6GZ5|1|B1|U|32
6GZ5|1|B1|G|33
6GZ5|1|B1|U|34
*
6GZ5|1|B1|A|521
6GZ5|1|B1|A|522
6GZ5|1|B1|A|523
6GZ5|1|B1|U|524
6GZ5|1|B1|A|525
6GZ5|1|B1|A|526
6GZ5|1|B1|C|527
*
6GZ5|1|B1|G|558
6GZ5|1|B1|G|559
6GZ5|1|B1|A|560
6GZ5|1|B1|A|561
6GZ5|1|B1|U|562
6GZ5|1|B1|G|563
6GZ5|1|B1|A|564
6GZ5|1|B1|G|565
*
6GZ5|1|B1|C|585
6GZ5|1|B1|G|586
6GZ5|1|B1|A|587
6GZ5|1|B1|G|588
6GZ5|1|B1|G|589
6GZ5|1|B1|A|590
6GZ5|1|B1|U|591
6GZ5|1|B1|C|592
6GZ5|1|B1|C|593
6GZ5|1|B1|A|594
6GZ5|1|B1|U|595
*
6GZ5|1|B1|A|641
6GZ5|1|B1|U|642
6GZ5|1|B1|A|643
6GZ5|1|B1|G|644

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BJ

ribosomal protein uS4

Chain BX

ribosomal protein uS12

Chain Be

ribosomal protein eS30