J5_6GZ5_009

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUCGACUU*AUGCCGACGGGC*GUGCAUUU*AACCUCGGGCCGAU*ACGACC

Length

48 nucleotides

Bulged bases

6GZ5|1|B1|C|125, 6GZ5|1|B1|G|126, 6GZ5|1|B1|C|142, 6GZ5|1|B1|U|143, 6GZ5|1|B1|U|214, 6GZ5|1|B1|G|215, 6GZ5|1|B1|U|305, 6GZ5|1|B1|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ5|1|B1|G|123
6GZ5|1|B1|U|124
6GZ5|1|B1|C|125
6GZ5|1|B1|G|126
6GZ5|1|B1|A|141
6GZ5|1|B1|C|142
6GZ5|1|B1|U|143
6GZ5|1|B1|U|144
*
6GZ5|1|B1|A|175
6GZ5|1|B1|U|176
6GZ5|1|B1|G|177
6GZ5|1|B1|C|178
6GZ5|1|B1|C|179
6GZ5|1|B1|G|180
6GZ5|1|B1|A|181
6GZ5|1|B1|C|182
6GZ5|1|B1|G|183
6GZ5|1|B1|G|184
6GZ5|1|B1|G|185
6GZ5|1|B1|C|186
*
6GZ5|1|B1|G|213
6GZ5|1|B1|U|214
6GZ5|1|B1|G|215
6GZ5|1|B1|C|216
6GZ5|1|B1|A|217
6GZ5|1|B1|U|218
6GZ5|1|B1|U|219
6GZ5|1|B1|U|220
*
6GZ5|1|B1|A|301
6GZ5|1|B1|A|302
6GZ5|1|B1|C|303
6GZ5|1|B1|C|304
6GZ5|1|B1|U|305
6GZ5|1|B1|C|306
6GZ5|1|B1|G|307
6GZ5|1|B1|G|308
6GZ5|1|B1|G|309
6GZ5|1|B1|C|310
6GZ5|1|B1|C|311
6GZ5|1|B1|G|312
6GZ5|1|B1|A|313
6GZ5|1|B1|U|314
*
6GZ5|1|B1|A|336
6GZ5|1|B1|C|337
6GZ5|1|B1|G|338
6GZ5|1|B1|A|339
6GZ5|1|B1|C|340
6GZ5|1|B1|C|341

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain AW

ribosomal protein eL24

Chain BE

ribosomal protein eS4

Chain BG

ribosomal protein eS6

Chain BI

ribosomal protein eS8