J5_6GZ5_010

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUCUUGG*CCCUUG*CGUUUAC*GAAUAAUGGAAUAGGACC*GCCAUGAU

Length

46 nucleotides

Bulged bases

6GZ5|1|B1|U|871, 6GZ5|1|B1|G|873, 6GZ5|1|B1|A|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ5|1|B1|A|685
6GZ5|1|B1|U|686
6GZ5|1|B1|C|687
6GZ5|1|B1|U|688
6GZ5|1|B1|U|689
6GZ5|1|B1|G|690
6GZ5|1|B1|G|691
*
6GZ5|1|B1|C|739
6GZ5|1|B1|C|740
6GZ5|1|B1|C|741
6GZ5|1|B1|U|742
6GZ5|1|B1|U|743
6GZ5|1|B1|G|744
*
6GZ5|1|B1|C|797
6GZ5|1|B1|G|798
6GZ5|1|B1|U|799
6GZ5|1|B1|U|800
6GZ5|1|B1|U|801
6GZ5|1|B1|A|802
6GZ5|1|B1|C|803
*
6GZ5|1|B1|G|860
6GZ5|1|B1|A|861
6GZ5|1|B1|A|862
6GZ5|1|B1|U|863
6GZ5|1|B1|A|864
6GZ5|1|B1|A|865
6GZ5|1|B1|U|866
6GZ5|1|B1|G|867
6GZ5|1|B1|G|868
6GZ5|1|B1|A|869
6GZ5|1|B1|A|870
6GZ5|1|B1|U|871
6GZ5|1|B1|A|872
6GZ5|1|B1|G|873
6GZ5|1|B1|G|874
6GZ5|1|B1|A|875
6GZ5|1|B1|C|876
6GZ5|1|B1|C|877
*
6GZ5|1|B1|G|910
6GZ5|1|B1|C|911
6GZ5|1|B1|C|912
6GZ5|1|B1|A|913
6GZ5|1|B1|U|914
6GZ5|1|B1|G|915
6GZ5|1|B1|A|916
6GZ5|1|B1|U|917

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain AR

ribosomal protein eL19

Chain BE

ribosomal protein eS4

Chain BH

ribosomal protein eS7

Chain BL

ribosomal protein uS17

Chain BN

ribosomal protein uS15

Chain BW

ribosomal protein uS8

Chain BX

ribosomal protein uS12