J5_6GZQ_002
3D structure
- PDB id
- 6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 6GZQ|1|A1|U|1303
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6GZQ_002 not in the Motif Atlas
- Homologous match to J5_7A0S_004
- Geometric discrepancy: 0.1315
- The information below is about J5_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6GZQ|1|A1|C|609
6GZQ|1|A1|G|610
6GZQ|1|A1|A|611
6GZQ|1|A1|C|612
6GZQ|1|A1|U|613
6GZQ|1|A1|C|614
*
6GZQ|1|A1|G|717
6GZQ|1|A1|G|718
6GZQ|1|A1|A|719
6GZQ|1|A1|C|720
*
6GZQ|1|A1|G|858
6GZQ|1|A1|U|859
6GZQ|1|A1|U|860
6GZQ|1|A1|C|861
*
6GZQ|1|A1|G|1242
6GZQ|1|A1|C|1243
*
6GZQ|1|A1|G|1298
6GZQ|1|A1|C|1299
6GZQ|1|A1|G|1300
6GZQ|1|A1|A|1301
6GZQ|1|A1|A|1302
6GZQ|1|A1|U|1303
6GZQ|1|A1|G|1304
Current chains
- Chain A1
- 23S ribosomal RNA
Nearby chains
- Chain E1
- 50S ribosomal protein L4
- Chain K1
- 50S ribosomal protein L15
- Chain P1
- 50S ribosomal protein L20
- Chain Q1
- 50S ribosomal protein L21
- Chain d1
- 50S ribosomal protein L35
Coloring options: