J5_6GZQ_003

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGUUC*GGUUAGGCGGGAC*GGCAGCC*GGCCCUUC*GAACCCGUAC

Length

43 nucleotides

Bulged bases

6GZQ|1|A1|U|1389, 6GZQ|1|A1|A|1432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZQ|1|A1|G|1358
6GZQ|1|A1|G|1359
6GZQ|1|A1|U|1360
6GZQ|1|A1|U|1361
6GZQ|1|A1|C|1362
*
6GZQ|1|A1|G|1386
6GZQ|1|A1|G|1387
6GZQ|1|A1|U|1388
6GZQ|1|A1|U|1389
6GZQ|1|A1|A|1390
6GZQ|1|A1|G|1391
6GZQ|1|A1|G|1392
6GZQ|1|A1|C|1393
6GZQ|1|A1|G|1394
6GZQ|1|A1|G|1395
6GZQ|1|A1|G|1396
6GZQ|1|A1|A|1397
6GZQ|1|A1|C|1398
*
6GZQ|1|A1|G|1429
6GZQ|1|A1|G|1430
6GZQ|1|A1|C|1431
6GZQ|1|A1|A|1432
6GZQ|1|A1|G|1433
6GZQ|1|A1|C|1434
6GZQ|1|A1|C|1435
*
6GZQ|1|A1|G|1448
6GZQ|1|A1|G|1449
6GZQ|1|A1|C|1450
6GZQ|1|A1|C|1451
6GZQ|1|A1|C|1452
6GZQ|1|A1|U|1453
6GZQ|1|A1|U|1454
6GZQ|1|A1|C|1455
*
6GZQ|1|A1|G|1643
6GZQ|1|A1|A|1644
6GZQ|1|A1|A|1645
6GZQ|1|A1|C|1646
6GZQ|1|A1|C|1647
6GZQ|1|A1|C|1648
6GZQ|1|A1|G|1649
6GZQ|1|A1|U|1650
6GZQ|1|A1|A|1651
6GZQ|1|A1|C|1652

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain S1

50S ribosomal protein L23

Chain X1

50S ribosomal protein L29

Chain c1

50S ribosomal protein L34