J5_6GZQ_004

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GCAAGUUGG*UGC*GCC*GUGAACAGG*CGC

Length

27 nucleotides

Bulged bases

6GZQ|1|A1|G|1791, 6GZQ|1|A1|G|1796

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZQ|1|A1|G|1723
6GZQ|1|A1|C|1724
6GZQ|1|A1|A|1725
6GZQ|1|A1|A|1726
6GZQ|1|A1|G|1727
6GZQ|1|A1|U|1728
6GZQ|1|A1|U|1729
6GZQ|1|A1|G|1730
6GZQ|1|A1|G|1731
*
6GZQ|1|A1|U|1755
6GZQ|1|A1|G|1756
6GZQ|1|A1|C|1757
*
6GZQ|1|A1|G|1783
6GZQ|1|A1|C|1784
6GZQ|1|A1|C|1785
*
6GZQ|1|A1|G|1789
6GZQ|1|A1|U|1790
6GZQ|1|A1|G|1791
6GZQ|1|A1|A|1792
6GZQ|1|A1|A|1793
6GZQ|1|A1|C|1794
6GZQ|1|A1|A|1795
6GZQ|1|A1|G|1796
6GZQ|1|A1|G|1797
*
6GZQ|1|A1|C|2012
6GZQ|1|A1|G|2013
6GZQ|1|A1|C|2014

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain D1

50S ribosomal protein L3

Chain J1

50S ribosomal protein L14

Chain O1

50S ribosomal protein L19