J5_6GZQ_009
3D structure
- PDB id
- 6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- ACGAAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCUCUAU
- Length
- 44 nucleotides
- Bulged bases
- 6GZQ|1|A1|C|2079, 6GZQ|1|A1|A|2086, 6GZQ|1|A1|A|2462, 6GZQ|1|A1|U|2463, 6GZQ|1|A1|G|2519, 6GZQ|1|A1|U|2520, 6GZQ|1|A1|U|2599, 6GZQ|1|A1|U|2623, 6GZQ|1|A1|C|2624
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GZQ|1|A1|A|2078
6GZQ|1|A1|C|2079
6GZQ|1|A1|G|2080
6GZQ|1|A1|A|2081
6GZQ|1|A1|A|2082
6GZQ|1|A1|A|2083
6GZQ|1|A1|A|2084
6GZQ|1|A1|G|2085
6GZQ|1|A1|A|2086
6GZQ|1|A1|C|2087
6GZQ|1|A1|C|2088
*
6GZQ|1|A1|G|2460
6GZQ|1|A1|G|2461
6GZQ|1|A1|A|2462
6GZQ|1|A1|U|2463
6GZQ|1|A1|A|2464
6GZQ|1|A1|A|2465
6GZQ|1|A1|C|2466
6GZQ|1|A1|A|2467
*
6GZQ|1|A1|U|2514
6GZQ|1|A1|C|2515
6GZQ|1|A1|G|2516
6GZQ|1|A1|A|2517
6GZQ|1|A1|U|2518
6GZQ|1|A1|G|2519
6GZQ|1|A1|U|2520
6GZQ|1|A1|C|2521
*
6GZQ|1|A1|G|2596
6GZQ|1|A1|G|2597
6GZQ|1|A1|U|2598
6GZQ|1|A1|U|2599
6GZQ|1|A1|C|2600
6GZQ|1|A1|A|2601
6GZQ|1|A1|G|2602
*
6GZQ|1|A1|C|2620
6GZQ|1|A1|G|2621
6GZQ|1|A1|G|2622
6GZQ|1|A1|U|2623
6GZQ|1|A1|C|2624
6GZQ|1|A1|U|2625
6GZQ|1|A1|C|2626
6GZQ|1|A1|U|2627
6GZQ|1|A1|A|2628
6GZQ|1|A1|U|2629
Current chains
- Chain A1
- 23S ribosomal RNA
Nearby chains
- Chain C1
- 50S ribosomal protein L2
- Chain D1
- 50S ribosomal protein L3
- Chain E1
- 50S ribosomal protein L4
- Chain L1
- 50S ribosomal protein L16
- Chain R1
- 50S ribosomal protein L22
- Chain a1
- 50S ribosomal protein L32
Coloring options: