J5_6H4N_001

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6H4N|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6H4N_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0511

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6H4N|1|A|C|47
6H4N|1|A|G|48
6H4N|1|A|A|49
6H4N|1|A|U|50
6H4N|1|A|G|51
6H4N|1|A|A|52
6H4N|1|A|A|53
6H4N|1|A|G|54
*
6H4N|1|A|C|116
6H4N|1|A|G|117
6H4N|1|A|A|118
6H4N|1|A|A|119
6H4N|1|A|U|120
6H4N|1|A|G|121
*
6H4N|1|A|C|130
6H4N|1|A|A|131
*
6H4N|1|A|U|148
6H4N|1|A|A|149
6H4N|1|A|U|150
*
6H4N|1|A|A|176
6H4N|1|A|G|177
6H4N|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34