J5_6HHQ_009

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

6HHQ|1|A|U|128, 6HHQ|1|A|U|132, 6HHQ|1|A|U|133, 6HHQ|1|A|A|138, 6HHQ|1|A|A|140, 6HHQ|1|A|U|141, 6HHQ|1|A|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HHQ|1|A|A|124
6HHQ|1|A|U|125
6HHQ|1|A|A|126
6HHQ|1|A|G|127
6HHQ|1|A|U|128
6HHQ|1|A|U|129
6HHQ|1|A|C|130
6HHQ|1|A|C|131
6HHQ|1|A|U|132
6HHQ|1|A|U|133
6HHQ|1|A|U|134
6HHQ|1|A|A|135
6HHQ|1|A|C|136
6HHQ|1|A|U|137
6HHQ|1|A|A|138
6HHQ|1|A|C|139
6HHQ|1|A|A|140
6HHQ|1|A|U|141
6HHQ|1|A|G|142
6HHQ|1|A|G|143
*
6HHQ|1|A|C|172
6HHQ|1|A|A|173
6HHQ|1|A|U|174
6HHQ|1|A|G|175
6HHQ|1|A|C|176
6HHQ|1|A|U|177
6HHQ|1|A|U|178
6HHQ|1|A|A|179
6HHQ|1|A|A|180
6HHQ|1|A|A|181
6HHQ|1|A|A|182
*
6HHQ|1|A|U|203
6HHQ|1|A|G|204
*
6HHQ|1|A|C|263
6HHQ|1|A|G|264
6HHQ|1|A|A|265
6HHQ|1|A|A|266
6HHQ|1|A|U|267
*
6HHQ|1|A|A|288
6HHQ|1|A|U|289
6HHQ|1|A|G|290
6HHQ|1|A|G|291
6HHQ|1|A|U|292
6HHQ|1|A|U|293

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain H

40S ribosomal protein S6-A

Chain J

40S ribosomal protein S8-A