J5_6HHQ_010
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU
- Length
- 35 nucleotides
- Bulged bases
- 6HHQ|1|A|U|638, 6HHQ|1|A|U|639, 6HHQ|1|A|U|694, 6HHQ|1|A|C|696, 6HHQ|1|A|C|697, 6HHQ|1|A|U|813, 6HHQ|1|A|G|815, 6HHQ|1|A|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HHQ|1|A|A|636
6HHQ|1|A|C|637
6HHQ|1|A|U|638
6HHQ|1|A|U|639
6HHQ|1|A|U|640
6HHQ|1|A|G|641
*
6HHQ|1|A|U|693
6HHQ|1|A|U|694
6HHQ|1|A|U|695
6HHQ|1|A|C|696
6HHQ|1|A|C|697
6HHQ|1|A|U|698
*
6HHQ|1|A|A|740
6HHQ|1|A|C|741
6HHQ|1|A|U|742
6HHQ|1|A|U|743
6HHQ|1|A|U|744
*
6HHQ|1|A|A|807
6HHQ|1|A|U|808
6HHQ|1|A|A|809
6HHQ|1|A|G|810
6HHQ|1|A|A|811
6HHQ|1|A|A|812
6HHQ|1|A|U|813
6HHQ|1|A|A|814
6HHQ|1|A|G|815
6HHQ|1|A|G|816
6HHQ|1|A|A|817
*
6HHQ|1|A|U|854
6HHQ|1|A|A|855
6HHQ|1|A|A|856
6HHQ|1|A|U|857
6HHQ|1|A|G|858
6HHQ|1|A|A|859
6HHQ|1|A|U|860
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S7-A
- Chain M
- 40S ribosomal protein S11-A
- Chain O
- 40S ribosomal protein S13
- Chain X
- 40S ribosomal protein S22-A
- Chain z
- 60S ribosomal protein L19-A
Coloring options: