J5_6HHQ_015

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGU*GUUUAG*UAGUUU

Length

38 nucleotides

Bulged bases

6HHQ|1|AR|A|2404, 6HHQ|1|AR|A|2817, 6HHQ|1|AR|U|2873, 6HHQ|1|AR|U|2954, 6HHQ|1|AR|U|2978, 6HHQ|1|AR|U|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HHQ|1|AR|A|2399
6HHQ|1|AR|G|2400
6HHQ|1|AR|A|2401
6HHQ|1|AR|A|2402
6HHQ|1|AR|G|2403
6HHQ|1|AR|A|2404
6HHQ|1|AR|C|2405
6HHQ|1|AR|C|2406
*
6HHQ|1|AR|G|2815
6HHQ|1|AR|G|2816
6HHQ|1|AR|A|2817
6HHQ|1|AR|U|2818
6HHQ|1|AR|A|2819
6HHQ|1|AR|A|2820
6HHQ|1|AR|C|2821
6HHQ|1|AR|U|2822
6HHQ|1|AR|G|2823
*
6HHQ|1|AR|C|2867
6HHQ|1|AR|U|2868
6HHQ|1|AR|U|2869
6HHQ|1|AR|C|2870
6HHQ|1|AR|G|2871
6HHQ|1|AR|A|2872
6HHQ|1|AR|U|2873
6HHQ|1|AR|G|2874
6HHQ|1|AR|U|2875
*
6HHQ|1|AR|G|2952
6HHQ|1|AR|U|2953
6HHQ|1|AR|U|2954
6HHQ|1|AR|U|2955
6HHQ|1|AR|A|2956
6HHQ|1|AR|G|2957
*
6HHQ|1|AR|U|2975
6HHQ|1|AR|A|2976
6HHQ|1|AR|G|2977
6HHQ|1|AR|U|2978
6HHQ|1|AR|U|2979
6HHQ|1|AR|U|2980

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L2-A

Chain CE

60S ribosomal protein L3

Chain CF

60S ribosomal protein L4-A

Chain DD

60S ribosomal protein L29