J5_6HHQ_017
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG
- Length
- 35 nucleotides
- Bulged bases
- 6HHQ|1|sR|A|541, 6HHQ|1|sR|A|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HHQ|1|sR|C|31
6HHQ|1|sR|U|32
6HHQ|1|sR|U|33
6HHQ|1|sR|G|34
6HHQ|1|sR|U|35
*
6HHQ|1|sR|A|473
6HHQ|1|sR|A|474
6HHQ|1|sR|A|475
6HHQ|1|sR|U|476
6HHQ|1|sR|A|477
6HHQ|1|sR|A|478
6HHQ|1|sR|C|479
*
6HHQ|1|sR|G|509
6HHQ|1|sR|G|510
6HHQ|1|sR|A|511
6HHQ|1|sR|A|512
6HHQ|1|sR|U|513
6HHQ|1|sR|G|514
6HHQ|1|sR|A|515
6HHQ|1|sR|G|516
*
6HHQ|1|sR|C|536
6HHQ|1|sR|G|537
6HHQ|1|sR|A|538
6HHQ|1|sR|G|539
6HHQ|1|sR|G|540
6HHQ|1|sR|A|541
6HHQ|1|sR|A|542
6HHQ|1|sR|C|543
6HHQ|1|sR|A|544
6HHQ|1|sR|A|545
6HHQ|1|sR|U|546
*
6HHQ|1|sR|A|592
6HHQ|1|sR|U|593
6HHQ|1|sR|A|594
6HHQ|1|sR|G|595
Current chains
- Chain sR
- 18S ribosomal RNA
Nearby chains
- Chain d3
- 40S ribosomal protein S23-A
- Chain e0
- 40S ribosomal protein S30-A
- Chain s9
- 40S ribosomal protein S9-A
Coloring options: