J5_6I0Y_001

3D structure

PDB id

6I0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6I0Y|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6I0Y_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0589

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6I0Y|1|A|C|47
6I0Y|1|A|G|48
6I0Y|1|A|A|49
6I0Y|1|A|U|50
6I0Y|1|A|G|51
6I0Y|1|A|A|52
6I0Y|1|A|A|53
6I0Y|1|A|G|54
*
6I0Y|1|A|C|116
6I0Y|1|A|G|117
6I0Y|1|A|A|118
6I0Y|1|A|A|119
6I0Y|1|A|U|120
6I0Y|1|A|G|121
*
6I0Y|1|A|C|130
6I0Y|1|A|A|131
*
6I0Y|1|A|U|148
6I0Y|1|A|A|149
6I0Y|1|A|U|150
*
6I0Y|1|A|A|176
6I0Y|1|A|G|177
6I0Y|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34