J5_6I7V_002

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6I7V_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0715

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6I7V|1|AA|C|36
6I7V|1|AA|U|37
6I7V|1|AA|G|38
6I7V|1|AA|G|39
*
6I7V|1|AA|C|403
6I7V|1|AA|G|404
6I7V|1|AA|U|405
6I7V|1|AA|G|406
*
6I7V|1|AA|C|436
6I7V|1|AA|U|437
6I7V|1|AA|U|438
6I7V|1|AA|U|439
6I7V|1|AA|C|440
6I7V|1|AA|A|441
6I7V|1|AA|G|442
*
6I7V|1|AA|C|492
6I7V|1|AA|A|493
6I7V|1|AA|G|494
6I7V|1|AA|A|495
6I7V|1|AA|A|496
6I7V|1|AA|G|497
6I7V|1|AA|A|498
6I7V|1|AA|A|499
6I7V|1|AA|G|500
*
6I7V|1|AA|C|545
6I7V|1|AA|A|546
6I7V|1|AA|A|547
6I7V|1|AA|G|548

Current chains

Chain AA

16S ribosmal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12