J5_6I7V_016

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GU*GUUUAG*CGGUCC

Length

35 nucleotides

Bulged bases

6I7V|1|DA|A|2062, 6I7V|1|DA|A|2448, 6I7V|1|DA|U|2585, 6I7V|1|DA|U|2609

QA status

Modified nucleotides: H2U, 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6I7V|1|DA|G|2057
6I7V|1|DA|A|2058
6I7V|1|DA|A|2059
6I7V|1|DA|A|2060
6I7V|1|DA|G|2061
6I7V|1|DA|A|2062
6I7V|1|DA|C|2063
6I7V|1|DA|C|2064
*
6I7V|1|DA|G|2446
6I7V|1|DA|G|2447
6I7V|1|DA|A|2448
6I7V|1|DA|H2U|2449
6I7V|1|DA|A|2450
6I7V|1|DA|A|2451
6I7V|1|DA|C|2452
6I7V|1|DA|A|2453
*
6I7V|1|DA|U|2500
6I7V|1|DA|C|2501
6I7V|1|DA|G|2502
6I7V|1|DA|2MA|2503
6I7V|1|DA|PSU|2504
6I7V|1|DA|G|2505
6I7V|1|DA|U|2506
*
6I7V|1|DA|G|2583
6I7V|1|DA|U|2584
6I7V|1|DA|U|2585
6I7V|1|DA|U|2586
6I7V|1|DA|A|2587
6I7V|1|DA|G|2588
*
6I7V|1|DA|C|2606
6I7V|1|DA|G|2607
6I7V|1|DA|G|2608
6I7V|1|DA|U|2609
6I7V|1|DA|C|2610
6I7V|1|DA|C|2611

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L32

Chain DC

50S ribosomal protein L2

Chain DD

50S ribosomal protein L3

Chain DE

50S ribosomal protein L4

Chain DM

50S ribosomal protein L15

Chain DN

50S ribosomal protein L16

Chain DT

50S ribosomal protein L22