J5_6K0B_002
3D structure
- PDB id
- 6K0B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of archaeal Ribonuclease P with mature tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GUUC*GAG*CCG*CUUCG*CC
- Length
- 17 nucleotides
- Bulged bases
- 6K0B|1|V|U|8, 6K0B|1|V|U|9
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6K0B_002 not in the Motif Atlas
- Homologous match to J5_4WZD_022
- Geometric discrepancy: 0.5152
- The information below is about J5_4WZD_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_70787.1
- Basepair signature
- cWW-cWW-cWW-F-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6K0B|1|V|G|7
6K0B|1|V|U|8
6K0B|1|V|U|9
6K0B|1|V|C|10
*
6K0B|1|V|G|26
6K0B|1|V|A|27
6K0B|1|V|G|28
*
6K0B|1|V|C|44
6K0B|1|V|C|45
6K0B|1|V|G|46
*
6K0B|1|V|C|54
6K0B|1|V|U|55
6K0B|1|V|U|56
6K0B|1|V|C|57
6K0B|1|V|G|58
*
6K0B|1|V|C|74
6K0B|1|V|C|75
Current chains
- Chain V
- tRNA
Nearby chains
- Chain B
- Ribonuclease P protein component 2
- Chain D
- Ribonuclease P protein component 3
- Chain F
- Ribonuclease P protein component 1
- Chain H
- Ribonuclease P protein component 4
- Chain Y
- Ribonuclease P; RNase P
Coloring options: