J5_6KE6_001
3D structure
- PDB id
- 6KE6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAAAAGAGC*GAUUACUAG*CAAUCUAUUUCAAAGAAUUCAAACUUG*CUCUCAA*UAG
- Length
- 55 nucleotides
- Bulged bases
- 6KE6|1|5A|U|294, 6KE6|1|5A|A|295, 6KE6|1|5A|C|296, 6KE6|1|5A|U|297, 6KE6|1|5A|A|298, 6KE6|1|5A|A|309, 6KE6|1|5A|A|313, 6KE6|1|5A|A|322, 6KE6|1|5A|A|329, 6KE6|1|5A|C|330, 6KE6|1|5A|U|331, 6KE6|1|5A|U|332, 6KE6|1|5A|A|396, 6KE6|1|5A|A|461
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6KE6|1|3A|C|54
6KE6|1|3A|A|55
6KE6|1|3A|A|56
6KE6|1|3A|A|57
6KE6|1|3A|A|58
6KE6|1|3A|G|59
6KE6|1|3A|A|60
6KE6|1|3A|G|61
6KE6|1|3A|C|62
*
6KE6|1|5A|G|291
6KE6|1|5A|A|292
6KE6|1|5A|U|293
6KE6|1|5A|U|294
6KE6|1|5A|A|295
6KE6|1|5A|C|296
6KE6|1|5A|U|297
6KE6|1|5A|A|298
6KE6|1|5A|G|299
*
6KE6|1|5A|C|307
6KE6|1|5A|A|308
6KE6|1|5A|A|309
6KE6|1|5A|U|310
6KE6|1|5A|C|311
6KE6|1|5A|U|312
6KE6|1|5A|A|313
6KE6|1|5A|U|314
6KE6|1|5A|U|315
6KE6|1|5A|U|316
6KE6|1|5A|C|317
6KE6|1|5A|A|318
6KE6|1|5A|A|319
6KE6|1|5A|A|320
6KE6|1|5A|G|321
6KE6|1|5A|A|322
6KE6|1|5A|A|323
6KE6|1|5A|U|324
6KE6|1|5A|U|325
6KE6|1|5A|C|326
6KE6|1|5A|A|327
6KE6|1|5A|A|328
6KE6|1|5A|A|329
6KE6|1|5A|C|330
6KE6|1|5A|U|331
6KE6|1|5A|U|332
6KE6|1|5A|G|333
*
6KE6|1|5A|C|391
6KE6|1|5A|U|392
6KE6|1|5A|C|393
6KE6|1|5A|U|394
6KE6|1|5A|C|395
6KE6|1|5A|A|396
6KE6|1|5A|A|397
*
6KE6|1|5A|U|460
6KE6|1|5A|A|461
6KE6|1|5A|G|462
Current chains
- Chain 3A
- U3 snoRNA
- Chain 5A
- 5' ETS
Nearby chains
- Chain 3E
- Nucleolar protein 58
- Chain 5C
- U3 small nucleolar RNA-associated protein 7
- Chain 5D
- U3 small nucleolar RNA-associated protein 11
- Chain 5E
- U3 small nucleolar RNA-associated protein MPP10
- Chain 5F
- U3 small nucleolar ribonucleoprotein protein IMP3
- Chain 5G
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain 5K
- rRNA-processing protein FCF1
- Chain B1
- Periodic tryptophan protein 2
- Chain B8
- U3 small nucleolar RNA-associated protein 18
- Chain BE
- U3 small nucleolar RNA-associated protein 21
- Chain RJ
- Ribosome biogenesis protein BMS1
- Chain RQ
- U3 small nucleolar RNA-associated protein 14
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