J5_6LQM_002
3D structure
- PDB id
- 6LQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- GGAGUC*G(2MG)AC*G(I4U)UC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 6LQM|1|2|C|2289, 6LQM|1|2|U|2350
- QA status
- Modified nucleotides: 2MG, I4U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6LQM_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0699
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6LQM|1|2|G|1335
6LQM|1|2|G|1336
6LQM|1|2|A|1337
6LQM|1|2|G|1338
6LQM|1|2|U|1339
6LQM|1|2|C|1340
*
6LQM|1|2|G|1516
6LQM|1|2|2MG|1517
6LQM|1|2|A|1518
6LQM|1|2|C|1519
*
6LQM|1|2|G|1658
6LQM|1|2|I4U|1659
6LQM|1|2|U|1660
6LQM|1|2|C|1661
*
6LQM|1|2|G|2288
6LQM|1|2|C|2289
6LQM|1|2|C|2290
*
6LQM|1|2|G|2345
6LQM|1|2|C|2346
6LQM|1|2|A|2347
6LQM|1|2|G|2348
6LQM|1|2|A|2349
6LQM|1|2|U|2350
6LQM|1|2|C|2351
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain D
- 60S ribosomal protein L4
- Chain L
- 60S ribosomal protein L27a
- Chain Q
- 60S ribosomal protein L13
- Chain U
- 60S ribosomal protein L15
- Chain l
- 60S ribosomal protein L28
- Chain t
- 60S ribosomal protein L32
Coloring options: