J5_6LQM_006
3D structure
- PDB id
- 6LQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- UG*CGAUGAAG*CGAACG*CG*UA
- Length
- 20 nucleotides
- Bulged bases
- 6LQM|1|8|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6LQM|1|2|U|20
6LQM|1|2|G|21
*
6LQM|1|8|C|35
6LQM|1|8|G|36
6LQM|1|8|A|37
6LQM|1|8|U|38
6LQM|1|8|G|39
6LQM|1|8|A|40
6LQM|1|8|A|41
6LQM|1|8|G|42
*
6LQM|1|8|C|101
6LQM|1|8|G|102
6LQM|1|8|A|103
6LQM|1|8|A|104
6LQM|1|8|C|105
6LQM|1|8|G|106
*
6LQM|1|8|C|113
6LQM|1|8|G|114
*
6LQM|1|8|U|136
6LQM|1|8|A|137
Current chains
- Chain 2
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain H
- 60S ribosomal protein L35
- Chain M
- 60S ribosomal protein L37
- Chain P
- 60S ribosomal protein L39
- Chain U
- 60S ribosomal protein L15
- Chain g
- 60S ribosomal protein L23a
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