J5_6MJ0_001

3D structure

PDB id

6MJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the complete turnip yellow mosaic virus 3'UTR

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GG*UAAUC*GC*GUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_33264.1

Basepair signature

cWW-cWW-F-cWW-cWW-cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

6MJ0|1|A|G|27
6MJ0|1|A|C|28
*
6MJ0|1|A|G|43
6MJ0|1|A|G|44
*
6MJ0|1|A|U|59
6MJ0|1|A|A|60
6MJ0|1|A|A|61
6MJ0|1|A|U|62
6MJ0|1|A|C|63
*
6MJ0|1|A|G|77
6MJ0|1|A|C|78
*
6MJ0|1|A|G|92
6MJ0|1|A|U|93
6MJ0|1|A|C|94

Current chains

Chain A

RNA (101-MER)

Nearby chains

Chain B

tRNA-like 3' UTR element