3D structure

PDB id
6MTB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC
Length
25 nucleotides
Bulged bases
6MTB|1|5|G|3620
QA status
Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6MTB_003 not in the Motif Atlas
Homologous match to J5_8C3A_004
Geometric discrepancy: 0.1212
The information below is about J5_8C3A_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6MTB|1|5|G|2855
6MTB|1|5|C|2856
6MTB|1|5|A|2857
6MTB|1|5|A|2858
6MTB|1|5|G|2859
6MTB|1|5|C|2860
6MTB|1|5|OMC|2861
6MTB|1|5|G|2862
6MTB|1|5|G|2863
*
6MTB|1|5|U|2887
6MTB|1|5|G|2888
*
6MTB|1|5|U|3613
6MTB|1|5|G|3614
*
6MTB|1|5|C|3618
6MTB|1|5|G|3619
6MTB|1|5|G|3620
6MTB|1|5|A|3621
6MTB|1|5|C|3622
6MTB|1|5|C|3623
6MTB|1|5|A|3624
6MTB|1|5|G|3625
6MTB|1|5|G|3626
*
6MTB|1|5|C|3835
6MTB|1|5|A|3836
6MTB|1|5|C|3837

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 9
Small subunit ribosomal RNA; SSU rRNA
Chain B
60S ribosomal protein L3
Chain R
60S ribosomal protein L19
Chain V
60S ribosomal protein L23
Chain W
60S ribosomal protein L24

Coloring options:


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