J5_6MTB_010
3D structure
- PDB id
- 6MTB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AUCUUG*CUG*CGUU*AUGGAAUAGG*CAUGAU
- Length
- 29 nucleotides
- Bulged bases
- 6MTB|1|9|C|687, 6MTB|1|9|A|869, 6MTB|1|9|U|871, 6MTB|1|9|G|873, 6MTB|1|9|A|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6MTB|1|9|A|685
6MTB|1|9|U|686
6MTB|1|9|C|687
6MTB|1|9|U|688
6MTB|1|9|U|689
6MTB|1|9|G|690
*
6MTB|1|9|C|736
6MTB|1|9|U|743
6MTB|1|9|G|744
*
6MTB|1|9|C|797
6MTB|1|9|G|798
6MTB|1|9|U|799
6MTB|1|9|U|800
*
6MTB|1|9|A|865
6MTB|1|9|U|866
6MTB|1|9|G|867
6MTB|1|9|G|868
6MTB|1|9|A|869
6MTB|1|9|A|870
6MTB|1|9|U|871
6MTB|1|9|A|872
6MTB|1|9|G|873
6MTB|1|9|G|874
*
6MTB|1|9|C|912
6MTB|1|9|A|913
6MTB|1|9|U|914
6MTB|1|9|G|915
6MTB|1|9|A|916
6MTB|1|9|U|917
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain EE
- 40S ribosomal protein S4, X isoform
- Chain HH
- 40S ribosomal protein S7
- Chain LL
- 40S ribosomal protein S11
- Chain NN
- 40S ribosomal protein S13
- Chain R
- 60S ribosomal protein L19
- Chain WW
- 40S ribosomal protein S15a
- Chain XX
- 40S ribosomal protein S23
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