J5_6MTC_004
3D structure
- PDB id
- 6MTC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AGAAGA(OMC)C*GGAUAACUG*CUU(5MC)GA(PSU)GUC*G(B8W)(UR3)(PSU)UAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 6MTC|1|5|A|3908, 6MTC|1|5|A|4394, 6MTC|1|5|G|4451, 6MTC|1|5|U|4452, 6MTC|1|5|U|4555, 6MTC|1|5|U|4556
- QA status
- Modified nucleotides: OMC, 5MC, PSU, B8W, UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6MTC|1|5|A|3903
6MTC|1|5|G|3904
6MTC|1|5|A|3905
6MTC|1|5|A|3906
6MTC|1|5|G|3907
6MTC|1|5|A|3908
6MTC|1|5|OMC|3909
6MTC|1|5|C|3910
*
6MTC|1|5|G|4392
6MTC|1|5|G|4393
6MTC|1|5|A|4394
6MTC|1|5|U|4395
6MTC|1|5|A|4396
6MTC|1|5|A|4397
6MTC|1|5|C|4398
6MTC|1|5|U|4399
6MTC|1|5|G|4400
*
6MTC|1|5|C|4444
6MTC|1|5|U|4445
6MTC|1|5|U|4446
6MTC|1|5|5MC|4447
6MTC|1|5|G|4448
6MTC|1|5|A|4449
6MTC|1|5|PSU|4450
6MTC|1|5|G|4451
6MTC|1|5|U|4452
6MTC|1|5|C|4453
*
6MTC|1|5|G|4528
6MTC|1|5|B8W|4529
6MTC|1|5|UR3|4530
6MTC|1|5|PSU|4531
6MTC|1|5|U|4532
6MTC|1|5|A|4533
6MTC|1|5|G|4534
*
6MTC|1|5|U|4552
6MTC|1|5|A|4553
6MTC|1|5|G|4554
6MTC|1|5|U|4555
6MTC|1|5|U|4556
6MTC|1|5|U|4557
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain B
- 60S ribosomal protein L3
- Chain C
- 60S ribosomal protein L4
- Chain I
- 60S ribosomal protein L10
- Chain P
- 60S ribosomal protein L17
- Chain a
- 60S ribosomal protein L27a
- Chain b
- 60S ribosomal protein L29
Coloring options: