J5_6MTC_009

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

6MTC|1|9|G|126, 6MTC|1|9|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTC|1|9|G|123
6MTC|1|9|U|124
6MTC|1|9|C|125
6MTC|1|9|G|126
6MTC|1|9|C|127
6MTC|1|9|U|128
6MTC|1|9|C|129
*
6MTC|1|9|G|183
6MTC|1|9|G|184
6MTC|1|9|G|185
*
6MTC|1|9|U|214
6MTC|1|9|G|215
*
6MTC|1|9|C|310
6MTC|1|9|C|311
6MTC|1|9|G|312
*
6MTC|1|9|C|337
6MTC|1|9|G|338
6MTC|1|9|A|339
6MTC|1|9|C|340
6MTC|1|9|C|341

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4, X isoform

Chain GG

40S ribosomal protein S6

Chain II

40S ribosomal protein S8