J5_6MTD_003
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6MTD|1|5|G|3620, 6MTD|1|5|G|3625
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6MTD_003 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1127
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6MTD|1|5|G|2855
6MTD|1|5|C|2856
6MTD|1|5|A|2857
6MTD|1|5|A|2858
6MTD|1|5|G|2859
6MTD|1|5|C|2860
6MTD|1|5|OMC|2861
6MTD|1|5|G|2862
6MTD|1|5|G|2863
*
6MTD|1|5|U|2887
6MTD|1|5|G|2888
*
6MTD|1|5|U|3613
6MTD|1|5|G|3614
*
6MTD|1|5|C|3618
6MTD|1|5|G|3619
6MTD|1|5|G|3620
6MTD|1|5|A|3621
6MTD|1|5|C|3622
6MTD|1|5|C|3623
6MTD|1|5|A|3624
6MTD|1|5|G|3625
6MTD|1|5|G|3626
*
6MTD|1|5|C|3835
6MTD|1|5|A|3836
6MTD|1|5|C|3837
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- uL3
- Chain R
- eL19
- Chain V
- uL14
- Chain W
- eL24
Coloring options: