J5_6MTD_004
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAAGA(OMC)C*GGAUAACUG*CUU(5MC)GA(PSU)GUC*G(B8W)(UR3)(PSU)UAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 6MTD|1|5|A|3908, 6MTD|1|5|A|4394, 6MTD|1|5|G|4451, 6MTD|1|5|U|4452, 6MTD|1|5|U|4555, 6MTD|1|5|U|4556
- QA status
- Modified nucleotides: OMC, 5MC, PSU, B8W, UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6MTD|1|5|A|3903
6MTD|1|5|G|3904
6MTD|1|5|A|3905
6MTD|1|5|A|3906
6MTD|1|5|G|3907
6MTD|1|5|A|3908
6MTD|1|5|OMC|3909
6MTD|1|5|C|3910
*
6MTD|1|5|G|4392
6MTD|1|5|G|4393
6MTD|1|5|A|4394
6MTD|1|5|U|4395
6MTD|1|5|A|4396
6MTD|1|5|A|4397
6MTD|1|5|C|4398
6MTD|1|5|U|4399
6MTD|1|5|G|4400
*
6MTD|1|5|C|4444
6MTD|1|5|U|4445
6MTD|1|5|U|4446
6MTD|1|5|5MC|4447
6MTD|1|5|G|4448
6MTD|1|5|A|4449
6MTD|1|5|PSU|4450
6MTD|1|5|G|4451
6MTD|1|5|U|4452
6MTD|1|5|C|4453
*
6MTD|1|5|G|4528
6MTD|1|5|B8W|4529
6MTD|1|5|UR3|4530
6MTD|1|5|PSU|4531
6MTD|1|5|U|4532
6MTD|1|5|A|4533
6MTD|1|5|G|4534
*
6MTD|1|5|U|4552
6MTD|1|5|A|4553
6MTD|1|5|G|4554
6MTD|1|5|U|4555
6MTD|1|5|U|4556
6MTD|1|5|U|4557
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain B
- uL3
- Chain C
- uL4
- Chain P
- uL22
- Chain a
- uL15
- Chain b
- eL29
Coloring options: