J5_6MTD_007

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTD|1|9|C|30
6MTD|1|9|U|31
6MTD|1|9|U|32
6MTD|1|9|G|33
6MTD|1|9|U|34
*
6MTD|1|9|A|521
6MTD|1|9|A|522
6MTD|1|9|A|523
6MTD|1|9|U|524
6MTD|1|9|A|525
6MTD|1|9|A|526
6MTD|1|9|C|527
*
6MTD|1|9|G|558
6MTD|1|9|G|559
6MTD|1|9|A|560
6MTD|1|9|A|561
6MTD|1|9|U|562
6MTD|1|9|G|563
6MTD|1|9|A|564
6MTD|1|9|G|565
*
6MTD|1|9|C|585
6MTD|1|9|G|586
6MTD|1|9|A|587
6MTD|1|9|G|588
6MTD|1|9|G|589
6MTD|1|9|A|590
6MTD|1|9|U|591
6MTD|1|9|C|592
6MTD|1|9|C|593
6MTD|1|9|A|594
6MTD|1|9|U|595
*
6MTD|1|9|A|641
6MTD|1|9|U|642
6MTD|1|9|A|643
6MTD|1|9|G|644

Current chains

Chain 9

18S rRNA

Nearby chains

Chain JJ

uS4

Chain XX

uS12

Chain ee

eS30