J5_6MTD_009

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

6MTD|1|9|G|126, 6MTD|1|9|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTD|1|9|G|123
6MTD|1|9|U|124
6MTD|1|9|C|125
6MTD|1|9|G|126
6MTD|1|9|C|127
6MTD|1|9|U|128
6MTD|1|9|C|129
*
6MTD|1|9|G|183
6MTD|1|9|G|184
6MTD|1|9|G|185
*
6MTD|1|9|U|214
6MTD|1|9|G|215
*
6MTD|1|9|C|310
6MTD|1|9|C|311
6MTD|1|9|G|312
*
6MTD|1|9|C|337
6MTD|1|9|G|338
6MTD|1|9|A|339
6MTD|1|9|C|340
6MTD|1|9|C|341

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain GG

eS6

Chain II

eS8