J5_6N8K_003
3D structure
- PDB id
- 6N8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UCAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAGAGUCG*CUAAGUG*UAAA
- Length
- 49 nucleotides
- Bulged bases
- 6N8K|1|1|U|117, 6N8K|1|1|G|120, 6N8K|1|1|A|121, 6N8K|1|1|U|147, 6N8K|1|1|G|156, 6N8K|1|1|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6N8K|1|1|U|112
6N8K|1|1|C|113
6N8K|1|1|A|114
6N8K|1|1|A|115
6N8K|1|1|A|116
6N8K|1|1|U|117
6N8K|1|1|U|118
6N8K|1|1|U|119
6N8K|1|1|G|120
6N8K|1|1|A|121
6N8K|1|1|A|122
6N8K|1|1|A|123
6N8K|1|1|U|124
*
6N8K|1|1|A|144
6N8K|1|1|G|145
6N8K|1|1|U|146
6N8K|1|1|U|147
6N8K|1|1|G|148
6N8K|1|1|U|149
6N8K|1|1|A|150
6N8K|1|1|A|151
6N8K|1|1|U|152
6N8K|1|1|U|153
6N8K|1|1|U|154
6N8K|1|1|G|155
6N8K|1|1|G|156
6N8K|1|1|A|157
6N8K|1|1|G|158
*
6N8K|1|1|C|263
6N8K|1|1|G|264
6N8K|1|1|A|265
6N8K|1|1|A|266
6N8K|1|1|G|267
6N8K|1|1|A|268
6N8K|1|1|G|269
6N8K|1|1|U|270
6N8K|1|1|C|271
6N8K|1|1|G|272
*
6N8K|1|1|C|293
6N8K|1|1|U|294
6N8K|1|1|A|295
6N8K|1|1|A|296
6N8K|1|1|G|297
6N8K|1|1|U|298
6N8K|1|1|G|299
*
6N8K|1|1|U|316
6N8K|1|1|A|317
6N8K|1|1|A|318
6N8K|1|1|A|319
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- 60S ribosomal protein L8-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
Coloring options: