J5_6N8K_005
3D structure
- PDB id
- 6N8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCGAG*CGUAAU*GUGAACGUAG*CGA*UAAGAGC
- Length
- 31 nucleotides
- Bulged bases
- 6N8K|1|1|U|719, 6N8K|1|1|A|784
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6N8K|1|1|G|674
6N8K|1|1|C|675
6N8K|1|1|G|676
6N8K|1|1|A|677
6N8K|1|1|G|678
*
6N8K|1|1|C|702
6N8K|1|1|G|703
6N8K|1|1|U|704
6N8K|1|1|A|705
6N8K|1|1|A|706
6N8K|1|1|U|707
*
6N8K|1|1|G|712
6N8K|1|1|U|713
6N8K|1|1|G|714
6N8K|1|1|A|715
6N8K|1|1|A|716
6N8K|1|1|C|717
6N8K|1|1|G|718
6N8K|1|1|U|719
6N8K|1|1|A|720
6N8K|1|1|G|721
*
6N8K|1|1|C|749
6N8K|1|1|G|750
6N8K|1|1|A|751
*
6N8K|1|1|U|782
6N8K|1|1|A|783
6N8K|1|1|A|784
6N8K|1|1|G|785
6N8K|1|1|A|786
6N8K|1|1|G|787
6N8K|1|1|C|788
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain a
- 60S ribosomal protein L28
- Chain i
- 60S ribosomal protein L36-A
- Chain o
- 60S ribosomal protein L29
Coloring options: