J5_6N8K_012
3D structure
- PDB id
- 6N8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AAGAAGAC*GAUAACUGGCUUGUGG*CUUUUUGAUUCUUCGAUGUCG*UGGGUUUAG*UAGUUUU
- Length
- 61 nucleotides
- Bulged bases
- 6N8K|1|1|A|2402, 6N8K|1|1|A|2404, 6N8K|1|1|C|2821, 6N8K|1|1|G|2824, 6N8K|1|1|C|2825, 6N8K|1|1|U|2826, 6N8K|1|1|U|2827, 6N8K|1|1|G|2863, 6N8K|1|1|C|2867, 6N8K|1|1|U|2869, 6N8K|1|1|G|2871, 6N8K|1|1|A|2872, 6N8K|1|1|U|2873, 6N8K|1|1|G|2874, 6N8K|1|1|U|2875, 6N8K|1|1|U|2954, 6N8K|1|1|U|2978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6N8K|1|1|A|2398
6N8K|1|1|A|2399
6N8K|1|1|G|2400
6N8K|1|1|A|2401
6N8K|1|1|A|2402
6N8K|1|1|G|2403
6N8K|1|1|A|2404
6N8K|1|1|C|2405
*
6N8K|1|1|G|2816
6N8K|1|1|A|2817
6N8K|1|1|U|2818
6N8K|1|1|A|2819
6N8K|1|1|A|2820
6N8K|1|1|C|2821
6N8K|1|1|U|2822
6N8K|1|1|G|2823
6N8K|1|1|G|2824
6N8K|1|1|C|2825
6N8K|1|1|U|2826
6N8K|1|1|U|2827
6N8K|1|1|G|2828
6N8K|1|1|U|2829
6N8K|1|1|G|2830
6N8K|1|1|G|2831
*
6N8K|1|1|C|2857
6N8K|1|1|U|2858
6N8K|1|1|U|2859
6N8K|1|1|U|2860
6N8K|1|1|U|2861
6N8K|1|1|U|2862
6N8K|1|1|G|2863
6N8K|1|1|A|2864
6N8K|1|1|U|2865
6N8K|1|1|U|2866
6N8K|1|1|C|2867
6N8K|1|1|U|2868
6N8K|1|1|U|2869
6N8K|1|1|C|2870
6N8K|1|1|G|2871
6N8K|1|1|A|2872
6N8K|1|1|U|2873
6N8K|1|1|G|2874
6N8K|1|1|U|2875
6N8K|1|1|C|2876
6N8K|1|1|G|2877
*
6N8K|1|1|U|2949
6N8K|1|1|G|2950
6N8K|1|1|G|2951
6N8K|1|1|G|2952
6N8K|1|1|U|2953
6N8K|1|1|U|2954
6N8K|1|1|U|2955
6N8K|1|1|A|2956
6N8K|1|1|G|2957
*
6N8K|1|1|U|2975
6N8K|1|1|A|2976
6N8K|1|1|G|2977
6N8K|1|1|U|2978
6N8K|1|1|U|2979
6N8K|1|1|U|2980
6N8K|1|1|U|2981
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain A
- 60S ribosomal protein L2-A
- Chain B
- 60S ribosomal protein L3
- Chain C
- 60S ribosomal protein L4-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain v
- 60S ribosomal export protein NMD3
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