J5_6N8L_001
3D structure
- PDB id
- 6N8L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 6N8L|1|3|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6N8L_001 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.0851
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6N8L|1|1|A|20
6N8L|1|1|G|21
6N8L|1|1|G|22
*
6N8L|1|3|C|35
6N8L|1|3|G|36
6N8L|1|3|A|37
6N8L|1|3|U|38
6N8L|1|3|G|39
6N8L|1|3|A|40
6N8L|1|3|A|41
6N8L|1|3|G|42
*
6N8L|1|3|U|102
6N8L|1|3|G|103
6N8L|1|3|A|104
6N8L|1|3|A|105
6N8L|1|3|C|106
6N8L|1|3|G|107
*
6N8L|1|3|C|115
6N8L|1|3|G|116
*
6N8L|1|3|C|137
6N8L|1|3|A|138
6N8L|1|3|U|139
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
- Chain 3
- 5.8S rRNA
Nearby chains
- Chain N
- 60S ribosomal protein L15-A
- Chain X
- 60S ribosomal protein L25
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
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