Loop J5_6N8N

3D structure

PDB id: 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.8 Å

Loop

Sequence: UCAAAUUUGAAA*UAAUUUGGAG*CGAAGAGUCG*CUAAGUG*UAAA
Length: 43 nucleotides
Bulged bases: 6N8N|1|A|U|117, 6N8N|1|A|G|120, 6N8N|1|A|A|121, 6N8N|1|A|G|156, 6N8N|1|A|U|298
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6N8N|1|A|U|112
6N8N|1|A|C|113
6N8N|1|A|A|114
6N8N|1|A|A|115
6N8N|1|A|A|116
6N8N|1|A|U|117
6N8N|1|A|U|118
6N8N|1|A|U|119
6N8N|1|A|G|120
6N8N|1|A|A|121
6N8N|1|A|A|122
6N8N|1|A|A|123
*
6N8N|1|A|U|149
6N8N|1|A|A|150
6N8N|1|A|A|151
6N8N|1|A|U|152
6N8N|1|A|U|153
6N8N|1|A|U|154
6N8N|1|A|G|155
6N8N|1|A|G|156
6N8N|1|A|A|157
6N8N|1|A|G|158
*
6N8N|1|A|C|263
6N8N|1|A|G|264
6N8N|1|A|A|265
6N8N|1|A|A|266
6N8N|1|A|G|267
6N8N|1|A|A|268
6N8N|1|A|G|269
6N8N|1|A|U|270
6N8N|1|A|C|271
6N8N|1|A|G|272
*
6N8N|1|A|C|293
6N8N|1|A|U|294
6N8N|1|A|A|295
6N8N|1|A|A|296
6N8N|1|A|G|297
6N8N|1|A|U|298
6N8N|1|A|G|299
*
6N8N|1|A|U|316
6N8N|1|A|A|317
6N8N|1|A|A|318
6N8N|1|A|A|319

Current chains

Chain A: Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain J: 60S ribosomal protein L8-A
Chain N: 60S ribosomal protein L13-A
Chain a: 60S ribosomal protein L15-A
Chain u: 60S ribosomal protein L35-A
Chain v: 60S ribosomal protein L36-A

J5_6N8N_002