J5_6N8N_004
3D structure
- PDB id
- 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 6N8N|1|A|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6N8N_004 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0996
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6N8N|1|A|G|658
6N8N|1|A|G|659
6N8N|1|A|A|660
6N8N|1|A|G|661
6N8N|1|A|U|662
6N8N|1|A|C|663
*
6N8N|1|A|G|799
6N8N|1|A|G|800
6N8N|1|A|A|801
6N8N|1|A|C|802
*
6N8N|1|A|G|941
6N8N|1|A|U|942
6N8N|1|A|U|943
6N8N|1|A|C|944
*
6N8N|1|A|G|1375
6N8N|1|A|C|1376
*
6N8N|1|A|G|1431
6N8N|1|A|C|1432
6N8N|1|A|A|1433
6N8N|1|A|G|1434
6N8N|1|A|A|1435
6N8N|1|A|U|1436
6N8N|1|A|C|1437
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- 60S ribosomal protein L4-A
- Chain N
- 60S ribosomal protein L13-A
- Chain a
- 60S ribosomal protein L15-A
- Chain n
- 60S ribosomal protein L28
- Chain r
- 60S ribosomal protein L32
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