J5_6N8O_009
3D structure
- PDB id
- 6N8O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 6N8O|1|A|G|2418, 6N8O|1|A|A|2799, 6N8O|1|A|G|2800, 6N8O|1|A|A|2801, 6N8O|1|A|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6N8O_009 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.2285
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
6N8O|1|A|U|2416
6N8O|1|A|U|2417
6N8O|1|A|G|2418
6N8O|1|A|A|2419
*
6N8O|1|A|U|2611
6N8O|1|A|U|2612
6N8O|1|A|U|2613
6N8O|1|A|G|2614
*
6N8O|1|A|C|2627
6N8O|1|A|A|2628
*
6N8O|1|A|U|2650
6N8O|1|A|G|2651
*
6N8O|1|A|C|2798
6N8O|1|A|A|2799
6N8O|1|A|G|2800
6N8O|1|A|A|2801
6N8O|1|A|A|2802
6N8O|1|A|A|2803
6N8O|1|A|A|2804
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain D
- 60S ribosomal protein L2-A
- Chain Q
- 60S ribosomal protein L42-A
- Chain V
- 60S ribosomal export protein NMD3
- Chain a
- 60S ribosomal protein L15-A
- Chain d
- 60S ribosomal protein L18-A
- Chain g
- 60S ribosomal protein L21-A
- Chain n
- 60S ribosomal protein L28
- Chain o
- 60S ribosomal protein L29
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