J5_6N9E_009

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6N9E|1|2A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6N9E_009 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1129

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6N9E|1|2A|C|47
6N9E|1|2A|G|48
6N9E|1|2A|A|49
6N9E|1|2A|U|50
6N9E|1|2A|G|51
6N9E|1|2A|A|52
6N9E|1|2A|A|53
6N9E|1|2A|G|54
*
6N9E|1|2A|C|116
6N9E|1|2A|G|117
6N9E|1|2A|A|118
6N9E|1|2A|A|119
6N9E|1|2A|U|120
6N9E|1|2A|G|121
*
6N9E|1|2A|C|130
6N9E|1|2A|G|131
*
6N9E|1|2A|C|148
6N9E|1|2A|A|149
6N9E|1|2A|C|150
*
6N9E|1|2A|G|176
6N9E|1|2A|G|177
6N9E|1|2A|G|178

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S Ribosomal Protein L23