J5_6N9E_012

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

6N9E|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N9E|1|2A|C|601
6N9E|1|2A|G|602
6N9E|1|2A|A|603
6N9E|1|2A|G|604
*
6N9E|1|2A|C|624
6N9E|1|2A|G|625
6N9E|1|2A|U|626
6N9E|1|2A|A|627
6N9E|1|2A|G|628
*
6N9E|1|2A|C|635
6N9E|1|2A|G|636
6N9E|1|2A|A|637
6N9E|1|2A|G|638
*
6N9E|1|2A|C|650
6N9E|1|2A|G|651
6N9E|1|2A|C|652
6N9E|1|2A|A|652|||A
6N9E|1|2A|A|652|||B
6N9E|1|2A|G|652|||C
*
6N9E|1|2A|C|652|||V
6N9E|1|2A|A|653
6N9E|1|2A|A|654
6N9E|1|2A|A|655
6N9E|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S Ribosomal Protein L35

Chain 2F

50S Ribosomal Protein L4

Chain 2P

50S Ribosomal Protein L15