J5_6N9F_001

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAUGAAGG*CCGAAUG*CG*CAC*GGG

Length

24 nucleotides

Bulged bases

6N9F|1|1A|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N9F|1|1A|C|46
6N9F|1|1A|G|47
6N9F|1|1A|A|48
6N9F|1|1A|U|49
6N9F|1|1A|G|50
6N9F|1|1A|A|51
6N9F|1|1A|A|52
6N9F|1|1A|G|53
6N9F|1|1A|G|54
*
6N9F|1|1A|C|113
6N9F|1|1A|C|114
6N9F|1|1A|G|115
6N9F|1|1A|A|116
6N9F|1|1A|A|117
6N9F|1|1A|U|118
6N9F|1|1A|G|119
*
6N9F|1|1A|C|128
6N9F|1|1A|G|129
*
6N9F|1|1A|C|148
6N9F|1|1A|A|149
6N9F|1|1A|C|150
*
6N9F|1|1A|G|165
6N9F|1|1A|G|166
6N9F|1|1A|G|167

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S Ribosomal Protein L23