3D structure

PDB id
6N9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3.7 Å

Loop

Sequence
AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU
Length
37 nucleotides
Bulged bases
6N9F|1|1A|A|2084, 6N9F|1|1A|A|2460, 6N9F|1|1A|U|2461, 6N9F|1|1A|U|2621
QA status
Modified nucleotides: 2MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6N9F|1|1A|A|2079
6N9F|1|1A|A|2080
6N9F|1|1A|A|2081
6N9F|1|1A|A|2082
6N9F|1|1A|G|2083
6N9F|1|1A|A|2084
6N9F|1|1A|C|2085
6N9F|1|1A|C|2086
*
6N9F|1|1A|G|2458
6N9F|1|1A|G|2459
6N9F|1|1A|A|2460
6N9F|1|1A|U|2461
6N9F|1|1A|A|2462
6N9F|1|1A|A|2463
6N9F|1|1A|C|2464
6N9F|1|1A|A|2465
*
6N9F|1|1A|U|2512
6N9F|1|1A|C|2513
6N9F|1|1A|G|2514
6N9F|1|1A|2MA|2515
6N9F|1|1A|U|2516
6N9F|1|1A|G|2517
6N9F|1|1A|U|2518
6N9F|1|1A|C|2519
*
6N9F|1|1A|G|2594
6N9F|1|1A|G|2595
6N9F|1|1A|U|2596
6N9F|1|1A|U|2597
6N9F|1|1A|C|2598
6N9F|1|1A|A|2599
6N9F|1|1A|G|2600
*
6N9F|1|1A|C|2618
6N9F|1|1A|G|2619
6N9F|1|1A|G|2620
6N9F|1|1A|U|2621
6N9F|1|1A|C|2622
6N9F|1|1A|U|2623

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 10
50S ribosomal protein L27
Chain 15
50S ribosomal protein L32
Chain 1D
50S Ribosomal Protein L2
Chain 1E
50S Ribosomal Protein L3
Chain 1F
50S Ribosomal Protein L4
Chain 1P
50S Ribosomal Protein L15
Chain 1Q
50S Ribosomal Protein L16
Chain 1W
50S Ribosomal Protein L22
Chain 1w
ACCA-DPhe
Chain 1x
Transfer RNA; tRNA

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.289 s