J5_6N9F_011

3D structure

PDB id

6N9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

6N9F|1|2A|U|272|||A, 6N9F|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N9F|1|2A|C|268
6N9F|1|2A|U|269
6N9F|1|2A|A|270
6N9F|1|2A|A|271
6N9F|1|2A|A|271|||A
6N9F|1|2A|C|271|||B
*
6N9F|1|2A|G|271|||V
6N9F|1|2A|G|271|||W
6N9F|1|2A|G|271|||X
6N9F|1|2A|U|271|||Y
6N9F|1|2A|C|271|||Z
6N9F|1|2A|G|272
6N9F|1|2A|U|272|||A
6N9F|1|2A|G|272|||B
*
6N9F|1|2A|C|366
6N9F|1|2A|G|370
6N9F|1|2A|A|371
6N9F|1|2A|G|372
6N9F|1|2A|U|373
6N9F|1|2A|A|374
6N9F|1|2A|C|375
*
6N9F|1|2A|G|399
6N9F|1|2A|G|400
6N9F|1|2A|A|401
6N9F|1|2A|A|402
6N9F|1|2A|U|403
6N9F|1|2A|C|404
6N9F|1|2A|U|405
6N9F|1|2A|G|406
*
6N9F|1|2A|U|421
6N9F|1|2A|A|422
6N9F|1|2A|A|423
6N9F|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S Ribosomal Protein L9