Loop J5_6N9F

3D structure

PDB id: 6N9F (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 3.7 Å

Loop

Sequence: AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU
Length: 37 nucleotides
Bulged bases: 6N9F|1|2A|A|2062, 6N9F|1|2A|A|2448, 6N9F|1|2A|U|2609
QA status: Modified nucleotides: 2MA

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6N9F|1|2A|A|2057
6N9F|1|2A|A|2058
6N9F|1|2A|A|2059
6N9F|1|2A|A|2060
6N9F|1|2A|G|2061
6N9F|1|2A|A|2062
6N9F|1|2A|C|2063
6N9F|1|2A|C|2064
*
6N9F|1|2A|G|2446
6N9F|1|2A|G|2447
6N9F|1|2A|A|2448
6N9F|1|2A|U|2449
6N9F|1|2A|A|2450
6N9F|1|2A|A|2451
6N9F|1|2A|C|2452
6N9F|1|2A|A|2453
*
6N9F|1|2A|U|2500
6N9F|1|2A|C|2501
6N9F|1|2A|G|2502
6N9F|1|2A|2MA|2503
6N9F|1|2A|U|2504
6N9F|1|2A|G|2505
6N9F|1|2A|U|2506
6N9F|1|2A|C|2507
*
6N9F|1|2A|G|2582
6N9F|1|2A|G|2583
6N9F|1|2A|U|2584
6N9F|1|2A|U|2585
6N9F|1|2A|C|2586
6N9F|1|2A|A|2587
6N9F|1|2A|G|2588
*
6N9F|1|2A|C|2606
6N9F|1|2A|G|2607
6N9F|1|2A|G|2608
6N9F|1|2A|U|2609
6N9F|1|2A|C|2610
6N9F|1|2A|U|2611

Current chains

Chain 2A: 23S Ribosomal RNA

Nearby chains

Chain 20: 50S ribosomal protein L27
Chain 25: 50S ribosomal protein L32
Chain 2D: 50S Ribosomal Protein L2
Chain 2E: 50S Ribosomal Protein L3
Chain 2F: 50S Ribosomal Protein L4
Chain 2P: 50S Ribosomal Protein L15
Chain 2Q: 50S Ribosomal Protein L16
Chain 2w: ACCA-DPhe
Chain 2x: Transfer RNA; tRNA

J5_6N9F_016